SRX077860
GSM743040: CDX2 ChIP-seq Biogenex Ab

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CDX2

Cell type

Cell type Class
Digestive tract
Cell type
COLO 320
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
colorectal cancer cells
cell line
COLO-320
chip antibody
CDX2 Ab (clone CDX2-88)
chip antibody manufacturer
Biogenex

Sequenced DNA Library

library_name
GSM743040: CDX2 ChIP-seq Biogenex Ab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22652478
Reads aligned (%)
98.5
Duplicates removed (%)
22.8
Number of peaks
629 (qval < 1E-05)

hg19

Number of total reads
22652478
Reads aligned (%)
97.6
Duplicates removed (%)
24.4
Number of peaks
916 (qval < 1E-05)

Base call quality data from DBCLS SRA