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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CDX2
wikigenes
PDBj
CellType: COLO 320
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX077860
GSM743040: CDX2 ChIP-seq Biogenex Ab
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CDX2
Cell type
Cell type Class
Digestive tract
Cell type
COLO 320
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
colorectal cancer cells
cell line
COLO-320
chip antibody
CDX2 Ab (clone CDX2-88)
chip antibody manufacturer
Biogenex
Sequenced DNA Library
library_name
GSM743040: CDX2 ChIP-seq Biogenex Ab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
22652478
Reads aligned (%)
98.5
Duplicates removed (%)
22.8
Number of peaks
629 (qval < 1E-05)
hg19
Number of total reads
22652478
Reads aligned (%)
97.6
Duplicates removed (%)
24.4
Number of peaks
916 (qval < 1E-05)
Base call quality data from
DBCLS SRA